Science & discovery
Adaptyv
How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval.
by K-DenseExplore
EDOZIE’S CORNER OF THE INTERNET COLLECTION 001 / SKILLS
Small skills.
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AI skills for your next project. Explore real workflows, with clear explainers and links to the people who built them.
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skills to explore
18 categories7 source collections
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PUBLIC SKILLS, ONE SEARCHABLE SHELFIndexed 25 Sep 2026 ↗
Explore the library 157
1–24 of 157 skills
Science & discovery
Alphagenome
Look up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), score variants or scan windows on demand with the AlphaGenome model for human and mouse…
by K-DenseExplore
Science & discovery
Analytical method validation
Plan, execute, and document validation, verification, and transfer of analytical procedures under the governing framework - ICH Q2(R2) and Q14, USP <1220>/<1225>/<1226>, ICH M10 bioanalytical, CLSI EP, or ISO/IEC 17025.
by K-DenseExplore
Science & discovery
Anndata
Data structure for annotated matrices in single-cell analysis.
by K-DenseExplore
Science & discovery
Ar resume
Resume a paused experiment. Checkout the experiment branch, read results history, continue iterating.
by Alireza RezvaniExplore
Science & discovery
Ar status
Show experiment dashboard with results, active loops, and progress.
by Alireza RezvaniExplore
Science & discovery
Arbor
Autonomously improve a real artifact (code, training recipe, agent harness, data pipeline, prompt) against an objective and an evaluator, using Hypothesis Tree Refinement (HTR) from the Arbor paper.
by K-DenseExplore
Science & discovery
Arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
by K-DenseExplore
Science & discovery
Astropy
Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology.
by K-DenseExplore
Science & discovery
Autoskill
Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered.
by K-DenseExplore
Science & discovery
Benchling integration
Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries.
by K-DenseExplore
Science & discovery
Bgpt paper search
Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server.
by K-DenseExplore
Science & discovery
Bids
Working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars, or creating BIDS derivatives.
by K-DenseExplore
Science & discovery
Biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez).
by K-DenseExplore
Science & discovery
Bioservices
Unified Python interface to 40+ bioinformatics services.
by K-DenseExplore
Science & discovery
Bulk rnaseq
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level counts matrix, then hands off to differential expression (pydeseq2), pathway/GSEA enrichment (pathway-enrichment), and publication figures (scientific-visualization).
by K-DenseExplore
Science & discovery
Cellxgene census
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data.
by K-DenseExplore
Science & discovery
Cirq
Google quantum computing framework.
by K-DenseExplore
Science & discovery
Citation management
Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries.
by K-DenseExplore
Science & discovery
Clinical decision support
Prepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts.
by K-DenseExplore
Science & discovery
Clinical reports
Create safety-bounded draft structures and run local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports.
by K-DenseExplore
Science & discovery
Clinical research
Designing a prospective clinical study before submission — selecting and classifying endpoints (primary / key-secondary / exploratory, with surrogate-endpoint flagging), estimating sample size and power for two-arm designs (means / proportions / survival), or scoring a study plan for feasibility and a GO / GO-WITH-CONDITIONS / REDESIGN / NO-GO phase-gate decision.
by Alireza RezvaniExplore
Science & discovery
Cobrapy
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
by K-DenseExplore
Science & discovery
Consciousness council
Run a multi-perspective Mind Council deliberation on any question, decision, or creative challenge.
by K-DenseExplore
Source-linked, not execution-tested. Check the publisher’s setup instructions and permissions before use.